simDOdistr {euroformix}R Documentation

simDOdistr

Description

MCMC Allele dropout distribution sampler based on total number of alleles in an evidence.

Usage

simDOdistr(totA, nC, popFreq, refData = NULL, M = 1000, minS = 2000,
  prC = 0, pDknown = rep(NA, nC))

Arguments

totA

Total number of allele-observations in evidence.

nC

Number of contributors to assume in the preposition.

popFreq

Population frequencies listed for each loci popFreq[[locname]]

refData

List with alleles to condition on. ref[[locname]][[referencename]]=(A1,A2)

M

is number of samples for each iteration.

minS

is number of minimum accepted samples.

prC

Assumed drop-in probability

pDknown

A vector of known drop-out probabilities for each contributors. Default is NA which means it is unknown.

Details

simDOdistr samples from the drop-out distribution based on total number of alleles in evidence under a specified prepositions. It returns if no samples was accepted in first iteration

Value

Vector with accepted samples from the dropout distribution

Author(s)

Oyvind Bleka


[Package euroformix version 1.11.3 Index]