calcQualLRcomparison {casesolver}R Documentation

calcQualLRcomparison

Description

Function calculating LR using EuroForMix for remaining matches (from Step 1)

Usage

calcQualLRcomparison(DBmix, DBref, matchlist, popFreq, pC = 0.05,
  maxC = 6, useMinK1 = TRUE, normalize = FALSE, minFreq = NULL,
  iterlim0 = 5)

Arguments

DBmix

A list with evidence information [[sample]][[loc]] = list(adata,hdata)

DBref

A (nR x nL) matrix with reference information. LIST not efficient

matchlist

A matrix with overview of what references are matches each of samples (SampleName,Reference)

popFreq

A list of allele frequencies for a given population.

pC

A numeric for allele drop-in probability. Can be a vector.

maxC

Maximum number of contributors possible to assume. Default is 6.

useMinK1

A boolean of whether minimum number of contributors to test should be one.

normalize

A boolean of whether normalization should be applied or not.

minFreq

The freq value included for new alleles. Default NULL is using min.observed in popFreq.

iterlim0

#max number of iterations in optimization


[Package casesolver version 1.8.1 Index]