calcQuanMLE {casesolver}R Documentation

calcQuanMLE

Description

A function to calculate under a specific hypotheses: a given evidence and given refData

Usage

calcQuanMLE(evidData, refData, condOrder, NOC, nnTK, isWOE = FALSE,
  verbose = FALSE, knownRef = NULL)

Arguments

evidData

A list with evidence data evidData[[sample]][[locus]]

refData

A list with reference data refData[[refname]][[locname]]$adata

condOrder

Conditional vector (hypothesis)

NOC

Assumed number of contributors

nnTK

an environment object from stored CaseSolver object

isWOE

Indicating whether fst should be used or not

verbose

Whether progress should be printed

knownRef

Specify known non-contributing references from refData (index). For instance knownRef=(1,2) means that reference 1 and 2 is known non-contributor in the hypothesis. This affectes coancestry correction.


[Package casesolver version 1.8.1 Index]