calcQualLRcomparison {casesolver} | R Documentation |
Function calculating LR using EuroForMix for remaining matches (from Step 1)
calcQualLRcomparison(DBmix, DBref, matchlist, popFreq, pC = 0.05, maxC = 6, useMinK1 = TRUE, normalize = FALSE, minFreq = NULL, iterlim0 = 5)
DBmix |
A list with evidence information [[sample]][[loc]] = list(adata,hdata) |
DBref |
A (nR x nL) matrix with reference information. LIST not efficient |
matchlist |
A matrix with overview of what references are matches each of samples (SampleName,Reference) |
popFreq |
A list of allele frequencies for a given population. |
pC |
A numeric for allele drop-in probability. Can be a vector. |
maxC |
Maximum number of contributors possible to assume. Default is 6. |
useMinK1 |
A boolean of whether minimum number of contributors to test should be one. |
normalize |
A boolean of whether normalization should be applied or not. |
minFreq |
The freq value included for new alleles. Default NULL is using min.observed in popFreq. |
iterlim0 |
#max number of iterations in optimization |