clusterOrder {casesolver}R Documentation

clusterOrder

Description

Order samples wrt to clustered hierachical structure (similarity)

Usage

clusterOrder(table, plot = FALSE)

Arguments

table

Table with genotypes

plot

Whether the dendrogram should be plotted

Details

Create distance between all genotypes (over all markers) and perform hierachical clustering (order returned) DISTANCE OUTCOMES: All shared (dist=0): (A/B vs A/B), (A/A vs A/A), (A vs A/B), (A vs A/A), (A vs A) None shared (dist=2): (A/B vs C/D), (A/A vs B/B), (A vs B/C), (A vs B/B), (A vs B) One shared (dist=1): (A/B vs B/C), (A/A vs A/B)

Value

order vector (ranked wrt hierarchical clustering)


[Package casesolver version 1.8.0 Index]