calcQuanMLE {casesolver} | R Documentation |
A function to calculate under a specific hypotheses: a given evidence and given refData
calcQuanMLE(evidData, refData, condOrder, NOC, nnTK, isWOE = FALSE, verbose = FALSE, knownRef = NULL)
evidData |
A list with evidence data evidData[[sample]][[locus]] |
refData |
A list with reference data refData[[refname]][[locname]]$adata |
condOrder |
Conditional vector (hypothesis) |
NOC |
Assumed number of contributors |
nnTK |
an environment object from stored CaseSolver object |
isWOE |
Indicating whether fst should be used or not |
verbose |
Whether progress should be printed |
knownRef |
Specify known non-contributing references from refData (index). For instance knownRef=(1,2) means that reference 1 and 2 is known non-contributor in the hypothesis. This affectes coancestry correction. |