validMLEmodel2 {EFMrep} | R Documentation |
validMLEmodel makes model validation whether the observed peak heights fits the maximum likelihood fitted gamma distribution.
validMLEmodel2(mlefit, plottitle = "PP-plot", alpha = 0.01, createplot = TRUE, verbose = TRUE)
mlefit |
Fitted object using contLikMLE |
plottitle |
Maintitle text used in the PP-plot |
alpha |
The significance level used for the envelope test. Default is 0.01 |
createplot |
Boolean of whether plot should be created |
verbose |
Boolean of whether printing out information about significant alleles |
The cumulative probability of the observed allele peaks are calculated and compared with a uniform distribution. Function calls a 'cumulative procedure' in C++ which uses the package Boost and performs paralellisation (OpenMP).
retinfo A dataframe with information from the calculated validation model
Oyvind Bleka